The above files include BWA read mapping results, the original and RACA assembly, predicted order and orientation of contigs in the original and RACA assembly, N50 and coverage stats., and adjacency errors.
The second argument : path to a RACA mapping file (will be created)
The third argument : path to a mapping stats. (mean and stdev) file (will be created)
08/19/2014 - A minor bug for handling headers fixed. Thanks Kapila Gunasekera (University of Bern, Switzerland)
04/20/2015 - There was a problem handling read orientations for reads with outward direction. Now it has been fixed and the argument for specifying the read orientation has been removed. Thanks Joana Daniela Damas (Royal Veterinary College, University of London)